This list was put together by Bob Hostetler and I found it very helpful.
31 Ways to Pray for Your Children
1 Salvation "Lord, let salvation spring up within my children, that they may obtain the salvation that is in Christ Jesus, with eternal glory" (Isaiah 45:8, 2 Timothy 2:10).
2 Growth in Grace "I pray that they may 'grow in the grace and knowledge of our Lord and Savior Jesus Christ'" (2 Peter 3:18).
3 Love "Grant, Lord, that my children may learn to 'live a life of love,' through the Spirit who dwells in them" (Ephesians 5:2, Galatians 5:22).
4 Honesty and Integrity " May integrity and honesty be their virtue and their protection" (Psalm 25:21, NLT).
5 Self-Control " Father, help my children not to be like many others around them, but let them be 'alert and self-controlled' in all they do" (1 Thessalonians 5:6)
6 A Love for God's Word " May my children grow to find your Word 'more precious than gold, than much pure gold; [and] sweeter than honey, than honey from the comb'" (Psalm 19:10).
7 Justice " God, help my children to love justice as you do and to 'act justly' in all they do" (Psalm 11:7, Micah 6:8).
8 Mercy " May my children always 'be merciful, as [their] Father is merciful'" (Luke 6:36).
9 Respect (for self, others, authority) " Father, grant that my children may 'show proper respect to everyone,' as your Word commands" (1 Peter 2:17a).
10 Strong, Biblical Self-Esteem " Help my children develop a strong self-esteem that is rooted in the realization that they are 'God's workmanship, created in Christ Jesus'" (Ephesians 2:10).
11 Faithfulness "' Let love and faithfulness never leave [my children],' but bind these twin virtues around their necks and write them on the tablet of their hearts" (Proverbs 3:3).
12 Courage "May my children always 'Be strong and courageous' in their character and in their actions" (Deuteronomy 31:6).
13 Purity "'Create in [them] a pure heart, O God,' and let their purity of heart be shown in their actions" (Psalm 51:10).
14 Kindness "Lord, may my children 'always try to be kind to each other and to everyone else'" (1 Thessalonians 5:15).
15 Generosity "Grant that my children may 'be generous and willing to share [and so] lay up treasure for themselves as a firm foundation for the coming age'" (1 Timothy 6:18-19).
16 Peace, Peaceability "Father, let my children 'make every effort to do what leads to peace'" (Romans 14:19).
17 Joy " May my children be filled 'with the joy given by the Holy Spirit'" (1 Thessalonians 1:6).
18 Perseverance " Lord, teach my children perseverance in all they do, and help them especially to 'run with perseverance the race marked out for [them]'" (Hebrews 12:1).
19 Humility " God, please cultivate in my children the ability to 'show true humility toward all'" (Titus 3:2).
20 Compassion " Lord, please clothe my children with the virtue of compassion" (Colossians 3:12).
21 Responsibility " Grant that my children may learn responsibility, 'for each one should carry his own load'" (Galatians 6:5).
22 Contentment " Father, teach my children 'the secret of being content in any and every situation. . . . through him who gives [them] strength'" (Philippians 4:12-13).
23 Faith " I pray that faith will find root and grow in my children's hearts, that by faith they may gain what has been promised to them" (Luke 17:5-6, Hebrews 11:1-40).
24 A Servant Heart " God, please help my children develop servant hearts, that they may serve wholeheartedly, 'as to the Lord, and not to men'" (Ephesians 6:7, KJV).
25 Hope " May the God of hope grant that my children may overflow with hope and hopefulness by the power of the Holy Spirit" (Romans 15:13).
26 The Willingness and Ability to Work Hard " Teach my children, Lord, to value work and to work hard at everything they do, 'as working for the Lord, not for men'" (Colossians 3:23).
27 A Passion for God " Lord, please instill in my children a soul that "followeth hard after thee," a heart that clings passionately to you (Psalm 63:8, KJV).
28 Self-Discipline " Father, I pray that my children may develop self-discipline, that they may acquire 'a disciplined and prudent life, doing what is right and just and fair'" (Proverbs 1:3).
29 Prayerfulness " Grant, Lord, that my children's lives may be marked by prayerfulness, that they may learn to 'pray in the Spirit on all occasions with all kinds of prayers and requests" (Ephesians 6:18).
30 Gratitude " Help my children to live lives that are always 'overflowing with thankfulness,' 'always giving thanks to God the Father for everything, in the name of our Lord Jesus Christ'" (Colossians 2:7, Ephesians 5:20).
31 A Heart for Missions " Lord, please help my children to develop a heart for missions, a desire to see your glory declared among the nations, your marvelous deeds among all peoples" (Psalm 96:3).
1 Salvation "Lord, let salvation spring up within my children, that they may obtain the salvation that is in Christ Jesus, with eternal glory" (Isaiah 45:8, 2 Timothy 2:10).
2 Growth in Grace "I pray that they may 'grow in the grace and knowledge of our Lord and Savior Jesus Christ'" (2 Peter 3:18).
3 Love "Grant, Lord, that my children may learn to 'live a life of love,' through the Spirit who dwells in them" (Ephesians 5:2, Galatians 5:22).
4 Honesty and Integrity " May integrity and honesty be their virtue and their protection" (Psalm 25:21, NLT).
5 Self-Control " Father, help my children not to be like many others around them, but let them be 'alert and self-controlled' in all they do" (1 Thessalonians 5:6)
6 A Love for God's Word " May my children grow to find your Word 'more precious than gold, than much pure gold; [and] sweeter than honey, than honey from the comb'" (Psalm 19:10).
7 Justice " God, help my children to love justice as you do and to 'act justly' in all they do" (Psalm 11:7, Micah 6:8).
8 Mercy " May my children always 'be merciful, as [their] Father is merciful'" (Luke 6:36).
9 Respect (for self, others, authority) " Father, grant that my children may 'show proper respect to everyone,' as your Word commands" (1 Peter 2:17a).
10 Strong, Biblical Self-Esteem " Help my children develop a strong self-esteem that is rooted in the realization that they are 'God's workmanship, created in Christ Jesus'" (Ephesians 2:10).
11 Faithfulness "' Let love and faithfulness never leave [my children],' but bind these twin virtues around their necks and write them on the tablet of their hearts" (Proverbs 3:3).
12 Courage "May my children always 'Be strong and courageous' in their character and in their actions" (Deuteronomy 31:6).
13 Purity "'Create in [them] a pure heart, O God,' and let their purity of heart be shown in their actions" (Psalm 51:10).
14 Kindness "Lord, may my children 'always try to be kind to each other and to everyone else'" (1 Thessalonians 5:15).
15 Generosity "Grant that my children may 'be generous and willing to share [and so] lay up treasure for themselves as a firm foundation for the coming age'" (1 Timothy 6:18-19).
16 Peace, Peaceability "Father, let my children 'make every effort to do what leads to peace'" (Romans 14:19).
17 Joy " May my children be filled 'with the joy given by the Holy Spirit'" (1 Thessalonians 1:6).
18 Perseverance " Lord, teach my children perseverance in all they do, and help them especially to 'run with perseverance the race marked out for [them]'" (Hebrews 12:1).
19 Humility " God, please cultivate in my children the ability to 'show true humility toward all'" (Titus 3:2).
20 Compassion " Lord, please clothe my children with the virtue of compassion" (Colossians 3:12).
21 Responsibility " Grant that my children may learn responsibility, 'for each one should carry his own load'" (Galatians 6:5).
22 Contentment " Father, teach my children 'the secret of being content in any and every situation. . . . through him who gives [them] strength'" (Philippians 4:12-13).
23 Faith " I pray that faith will find root and grow in my children's hearts, that by faith they may gain what has been promised to them" (Luke 17:5-6, Hebrews 11:1-40).
24 A Servant Heart " God, please help my children develop servant hearts, that they may serve wholeheartedly, 'as to the Lord, and not to men'" (Ephesians 6:7, KJV).
25 Hope " May the God of hope grant that my children may overflow with hope and hopefulness by the power of the Holy Spirit" (Romans 15:13).
26 The Willingness and Ability to Work Hard " Teach my children, Lord, to value work and to work hard at everything they do, 'as working for the Lord, not for men'" (Colossians 3:23).
27 A Passion for God " Lord, please instill in my children a soul that "followeth hard after thee," a heart that clings passionately to you (Psalm 63:8, KJV).
28 Self-Discipline " Father, I pray that my children may develop self-discipline, that they may acquire 'a disciplined and prudent life, doing what is right and just and fair'" (Proverbs 1:3).
29 Prayerfulness " Grant, Lord, that my children's lives may be marked by prayerfulness, that they may learn to 'pray in the Spirit on all occasions with all kinds of prayers and requests" (Ephesians 6:18).
30 Gratitude " Help my children to live lives that are always 'overflowing with thankfulness,' 'always giving thanks to God the Father for everything, in the name of our Lord Jesus Christ'" (Colossians 2:7, Ephesians 5:20).
31 A Heart for Missions " Lord, please help my children to develop a heart for missions, a desire to see your glory declared among the nations, your marvelous deeds among all peoples" (Psalm 96:3).